Gee, John. "Notes and Communications: New and Old Light on Shawabtis from Mesoamerica." Journal of Book of Mormon Studies 6, no. 1 (1997): 64-69.

Gee, John. "Wilford A. Fischer and Norma J. Fischer, A Book of Mormon Guide: A Simple Way to Teach a Friend." Review of Books on the Book of Mormon 2, no. 1 (1990): 77-85.

Gee, John. "La Trahison des Clercs: On the Language and Translation of the Book of Mormon." Review of Books on the Book of Mormon 6, no. 1 (1994): 51-120.

Gee, John. The Crocodile God of Pharaoh in Mesopotamia In Insights. Vol. 108. Foundation for Ancient Research and Mormon Studies, 1996.

Gee, John. "The Hagiography of Doubting Thomas." FARMS Review of Books 10, no. 2 (1998): 158-183.

Gee, John. "The Wrong Type of Book." In Echoes and Evidences of the Book of Mormon, edited by Donald W. Parry, Daniel C. Peterson and John W. Welch, 307-329. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2002.

Gee, John. "Four Idolatrous Gods in the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 38 (2020): 133-152.