Muhlestein, Kerry M., and John Gee. "An Egyptian Context for the Sacrifice of Abraham." Journal of the Book of Mormon and Other Restoration Scripture 20, no. 2 (2011): 70-77.

Gee, John. "The Corruption of Scripture in Early Christianity." In Early Christians in Disarray: Contemporary LDS Perspectives on the Christian Apostasy, edited by Noel B. Reynolds, 163-204. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2005.

Hoskisson, Paul Y., Brian M. Hauglid, and John Gee. "What’s in a Name? Irreantum." Journal of Book of Mormon Studies 11, no. 1 (2002): 90-93, 114-115.

Gee, John. The Role of the Book of Abraham in the Restoration. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1997.

Gee, John. "Notes and Communications: Two Notes on Egyptian Script." Journal of Book of Mormon Studies 5, no. 1 (1996): 162-176.

Millet, Robert L., Gary Lee Walker, Jerry C. Giles, Gerald Hansen, Jr., Andrew C. Skinner, J. Philip Schaelling, Daniel C. Peterson, Merril C. Oaks, Tad R. Callister, John Gee et al. Jesus Christ In Encyclopedia of Mormonism, Edited by Daniel H. Ludlow. Vol. 2. New York: Macmillan, 1992.

Gee, John. "Limhi in the Library." Journal of Book of Mormon Studies 1, no. 1 (1992): 54-66.

Gee, John. "Robert L. Millet, By Grace Are We Saved." Review of Books on the Book of Mormon 2, no. 1 (1990): 100-106.