Gee, John. "The Corruption of Scripture in Early Christianity." In Early Christians in Disarray: Contemporary LDS Perspectives on the Christian Apostasy, edited by Noel B. Reynolds, 163-204. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2005.

Gee, John. "The Grace of Christ." FARMS Review 22, no. 1 (2010): 247-259.

Gee, John. The Role of the Book of Abraham in the Restoration. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1997.

Gee, John. "The Wrong Type of Book." In Echoes and Evidences of the Book of Mormon, edited by Donald W. Parry, Daniel C. Peterson and John W. Welch, 307-329. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2002.

Gee, John. "“An Obstacle to Deeper Understanding”." FARMS Review of Books 12, no. 2 (2000): 185-224.

Gee, John. "Fantasy and Reality in the Translation of the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 127-170.

Gee, John. "The Joseph Smith Papers Project Stumbles." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 33 (2019): 175-186.

Gee, John. "On Corrupting the Youth." The FARMS Review 22, no. 2 (2010): 195-228.

Peterson, Daniel C., and John Gee. "Editor's Introduction: Through a Glass, Darkly." FARMS Review of Books 9, no. 2 (1997): v-xxix.

Gee, John. "Notes and Communications: New and Old Light on Shawabtis from Mesoamerica." Journal of Book of Mormon Studies 6, no. 1 (1997): 64-69.

Muhlestein, Kerry M., and John Gee. "An Egyptian Context for the Sacrifice of Abraham." Journal of the Book of Mormon and Other Restoration Scripture 20, no. 2 (2011): 70-77.

Gee, John. "Four Suggestions on the Origin of the Name Nephi." In Pressing Forward with the Book of Mormon: The FARMS Updates of the 1990s, edited by John W. Welch and Melvin J. Thorne, 1-5. Provo, UT: FARMS, 1999.

Muhlestein, Kerry M., and John Gee. "An Egyptian Context for the Sacrifice of Abraham." Journal of the Book of Mormon and Other Restoration Scripture 20, no. 2 (2011): 70-77.

Gee, John. "Notes and Communications: Two Notes on Egyptian Script." Journal of Book of Mormon Studies 5, no. 1 (1996): 162-176.

Gee, John. "Two Notes on Egyptian Script." In Pressing Forward with the Book of Mormon: The FARMS Updates of the 1990s, edited by John W. Welch and Melvin J. Thorne, 244-247. Provo, UT: FARMS, 1999.

Hoskisson, Paul Y., Brian M. Hauglid, and John Gee. "What’s in a Name? Irreantum." Journal of Book of Mormon Studies 11, no. 1 (2002): 90-93, 114-115.

Gee, John. "Prolegomena to a Study of the Egyptian Alphabet Documents in the Joseph Smith Papers." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 77-98.

Gee, John. A History of the Joseph Smith Papyri and Book of Abraham. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1999.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Astronomy, Papyrus, and Covenant In Studies in the Book of Abraham, Edited by John Gee and Brian M. Hauglid. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Hedges, Andrew H.. "A Wanderer in a Strange Land: Abraham in America, 1800-1850." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 175-187. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Ludlow, Jared W.. "Abraham's Vision of the Heavens." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 57-73. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Barney, Kevin L.. "The Facsimiles and Semitic Adaptation of Existing Sources." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 107-130. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John, William J. Hamblin, and Daniel C. Peterson. ""And I Saw the Stars": The Book of Abraham and Ancient Geocentric Astronomy." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 1-16. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Draper, Richard D.. "The Creation of Humankind, An Allegory?: A Note on Abraham 5:7, 14-16." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 75-82. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Egyptian Society during the Twenty-sixth Dynasty." In Glimpses of Lehi's Jerusalem, edited by John W. Welch, David Rolph Seely and Jo Ann H. Seely, 277-298. Provo, UT: Foundation for Ancient Research And Mormon Studies, 2004.

Hauglid, Brian M.. "The Book of Abraham and Muslim Tradition." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 131-146. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John, William J. Hamblin, and Daniel C. Peterson. ""And I Saw the Stars": The Book of Abraham and Ancient Geocentric Astronomy." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 1-16. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. The Crocodile God of Pharaoh in Mesopotamia In Insights. Vol. 108. Foundation for Ancient Research and Mormon Studies, 1996.

Nadig, Peter C.. ""We Beg You, Our King!": Some Reflections on the Jews in Persian and Ptolemaic Egypt." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 83-93. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Who Was Not the Pharaoh of the Exodus." FARMS Review of Books 9, no. 1 (1997): 43-50.

Hovorka, Janet. "Sarah and Hagar: Ancient Women of the Abrahamic Covenant." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 147-166. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Rhodes, Michael D., and J. Ward Moody. "Astronomy and the Creation in the Book of Abraham." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 17-36. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. The Ancient Owners of the Joseph Smith Papyri. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1999.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. Notes on the Sons of Horus. Provo, UT: FARMS, 1991.

Lane, Jennifer C.. "The Redemption of Abraham." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 167-174. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Clark, E. Douglas. "Cedars and Stars: Enduring Symbols of Cosmic Kingship in Abraham's Encounter with Pharaoh." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 37-55. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Four Idolatrous Gods in the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 38 (2020): 133-152.

Gee, John. "Daniel H. Ludlow, ed., The Encyclopedia of Mormonism." Review of Books on the Book of Mormon 5, no. 1 (1993): 172-182.

Gee, John. "Epigraphic Considerations on Janne Sjodahl’s Experiment with Nephite Writing." Journal of Book of Mormon Studies 10, no. 1 (2001): 25, 79.