Gee, John. "“The Wind and the Fire to Be My Chariot”: The Anachronism that Wasn’t." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 50 (2022): 299-320.

Gee, John. "On Corrupting the Youth." The FARMS Review 22, no. 2 (2010): 195-228.

Tvedtnes, John A., John Gee, and Matthew Roper. "Book of Mormon Names Attested in Ancient Hebrew Inscriptions." Journal of Book of Mormon Studies 9, no. 1 (2000): 40-51, 78-79.

Gee, John. "A Book of Mormon Christology at Last." FARMS Review of Books 10, no. 2 (1998): 7-8.

Gee, John. "Who Was Not the Pharaoh of the Exodus." FARMS Review of Books 9, no. 1 (1997): 43-50.

Gee, John. "A Book of Mormon Christology at Last." FARMS Review of Books 10, no. 2 (1998): 7-8.

Muhlestein, Kerry M., and John Gee. "An Egyptian Context for the Sacrifice of Abraham." Journal of the Book of Mormon and Other Restoration Scripture 20, no. 2 (2011): 70-77.

Gee, John. "The Corruption of Scripture in Early Christianity." In Early Christians in Disarray: Contemporary LDS Perspectives on the Christian Apostasy, edited by Noel B. Reynolds, 163-204. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2005.

Gee, John. "La Trahison des Clercs: On the Language and Translation of the Book of Mormon." Review of Books on the Book of Mormon 6, no. 1 (1994): 51-120.

Gee, John. "Abracadabra, Isaac and Jacob." Review of Books on the Book of Mormon 7, no. 1 (1995): 19-84.

Gee, John. "A Tragedy of Errors." Review of Books on the Book of Mormon 4, no. 1 (1992): 93-119.

Gee, John. "“Bird Island” Revisited, or the Book of Mormon through Pyramidal Kabbalistic Glasses." Review of Books on the Book of Mormon 7, no. 1 (1995): 219-228.

Gee, John. "Conclusions in Search of Evidence." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 34 (2020): 161-178.