Gee, John. "“The Wind and the Fire to Be My Chariot”: The Anachronism that Wasn’t." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 50 (2022): 299-320.

Muhlestein, Kerry M., and John Gee. "An Egyptian Context for the Sacrifice of Abraham." Journal of the Book of Mormon and Other Restoration Scripture 20, no. 2 (2011): 70-77.

Gee, John. "Formulas and Faith." Journal of the Book of Mormon and Other Restoration Scripture 21, no. 1 (2012): 60-65.

Gee, John. "A Tragedy of Errors." Review of Books on the Book of Mormon 4, no. 1 (1992): 93-119.

Gee, John. "Abracadabra, Isaac and Jacob." Review of Books on the Book of Mormon 7, no. 1 (1995): 19-84.

Gee, John. "Telling the Story of the Joseph Smith Papyri." FARMS Review of Books 8, no. 2 (1996): 46-59.

Gee, John. The Role of the Book of Abraham in the Restoration. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1997.

Gee, John. A History of the Joseph Smith Papyri and Book of Abraham. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1999.

Gee, John. The Ancient Owners of the Joseph Smith Papyri. Provo, UT: Foundation for Ancient Research and Mormon Studies, 1999.

Hedges, Andrew H.. "A Wanderer in a Strange Land: Abraham in America, 1800-1850." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 175-187. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Lane, Jennifer C.. "The Redemption of Abraham." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 167-174. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Hovorka, Janet. "Sarah and Hagar: Ancient Women of the Abrahamic Covenant." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 147-166. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Hauglid, Brian M.. "The Book of Abraham and Muslim Tradition." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 131-146. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Barney, Kevin L.. "The Facsimiles and Semitic Adaptation of Existing Sources." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 107-130. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Nadig, Peter C.. ""We Beg You, Our King!": Some Reflections on the Jews in Persian and Ptolemaic Egypt." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 83-93. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Draper, Richard D.. "The Creation of Humankind, An Allegory?: A Note on Abraham 5:7, 14-16." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 75-82. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Ludlow, Jared W.. "Abraham's Vision of the Heavens." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 57-73. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Clark, E. Douglas. "Cedars and Stars: Enduring Symbols of Cosmic Kingship in Abraham's Encounter with Pharaoh." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 37-55. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Rhodes, Michael D., and J. Ward Moody. "Astronomy and the Creation in the Book of Abraham." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 17-36. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John, William J. Hamblin, and Daniel C. Peterson. ""And I Saw the Stars": The Book of Abraham and Ancient Geocentric Astronomy." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 1-16. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John, William J. Hamblin, and Daniel C. Peterson. ""And I Saw the Stars": The Book of Abraham and Ancient Geocentric Astronomy." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 1-16. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Astronomy, Papyrus, and Covenant In Studies in the Book of Abraham, Edited by John Gee and Brian M. Hauglid. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. Notes on the Sons of Horus. Provo, UT: FARMS, 1991.

Gee, John. "The Joseph Smith Papers Project Stumbles." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 33 (2019): 175-186.

Gee, John. "One Side of a Nonexistent Conversation." The FARMS Review 15, no. 1 (2003): 81-85.

Gee, John. "A Method for Studying the Facsimiles." The FARMS Review 19, no. 1 (2007): 347-353.

Gee, John. "New Light on the Joseph Smith Papyri." The FARMS Review 19, no. 2 (2007): 245-259.

Gee, John. "Some Puzzles from the Joseph Smith Papyri." The FARMS Review 20, no. 1 (2008): 113-137.

Gee, John. "Taking Stock." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 34 (2020): 113-118.

Gee, John. "Four Idolatrous Gods in the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 38 (2020): 133-152.

Gee, John. "Prolegomena to a Study of the Egyptian Alphabet Documents in the Joseph Smith Papers." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 77-98.

Gee, John. "Fantasy and Reality in the Translation of the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 127-170.

Gee, John. "Eyewitness, Hearsay, and Physical Evidence of the Joseph Smith Papyri." In The Disciple as Witness: Essays on Latter-day Saint History and Doctrine in Honor of Richard Lloyd Anderson, edited by Stephen D. Ricks, Donald W. Parry and Andrew H. Hedges, 175-217. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Barney, Kevin L.. "The Facsimiles and Semitic Adaptation of Existing Sources." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 107-130. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Astronomy, Papyrus, and Covenant In Studies in the Book of Abraham, Edited by John Gee and Brian M. Hauglid. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "A Method for Studying the Facsimiles." The FARMS Review 19, no. 1 (2007): 347-353.

Gee, John. "Fantasy and Reality in the Translation of the Book of Abraham." Interpreter: A Journal of Latter-day Saint Faith and Scholarship 42 (2021): 127-170.

Gee, John. "Eyewitness, Hearsay, and Physical Evidence of the Joseph Smith Papyri." In The Disciple as Witness: Essays on Latter-day Saint History and Doctrine in Honor of Richard Lloyd Anderson, edited by Stephen D. Ricks, Donald W. Parry and Andrew H. Hedges, 175-217. Provo, UT: Foundation for Ancient Research and Mormon Studies, 2000.

Gee, John. "Another Note on the Three Days of Darkness." In Pressing Forward with the Book of Mormon: The FARMS Updates of the 1990s, edited by John W. Welch and Melvin J. Thorne, 219-227. Provo, UT: FARMS, 1999.

Gee, John. "Notes and Communications: New and Old Light on Shawabtis from Mesoamerica." Journal of Book of Mormon Studies 6, no. 1 (1997): 64-69.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.

Gee, John. "Facsimile 3 and Book of the Dead 125." In Astronomy, Papyrus, and Covenant, edited by John Gee and Brian M. Hauglid, 95-105. Provo, UT: Foundation for Ancient Research and Mormon Studies, Brigham Young University, 2005.